Impacts of Climate change on soil microbial diversity, distribution and abundance


Guta Amante, Mulisa Wedajo


Abstract


Climate change, driven by anthropogenic activities, has far-reaching consequences for our planet. Among its many impacts, changes in temperature, elevated carbon dioxide levels, and shifts in greenhouse gas concentrations significantly affect soil ecosystems. In particular, soil microbial communities play a pivotal role in nutrient cycling, organic matter decomposition, and overall soil health. Soil microbial communities respond differently to the effects of climate change, like elevated warming and precipitation. The change in climatic conditions is reported to be adversely affecting soil biological activity directly through either drying or wetting of soil or affecting their associated plants. This review delves into the intricate relationship between climate change and soil microbial abundance, diversity, and distribution. The paper also discusses climatic change pressure on soil enzymatic activity and microbial biomasses, as well as soil faunal activity, as they are key indicators of soil health in a changing climate. Soil microbial communities cope with climate change by changing their diversity and physiological characteristics and by changing their symbiotic plants, which indicates the role of soil microbes in withstanding the negative impact of climate change.


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IPCC (2007). the physical science basis. Contribution of working group I to the fourth assessment report of the intergovernmental panel on climate change. In: Solomon S, Qin D, Manning M, Chen Z, Marquis M, Averyt KB, Tignor M, Miller HL (eds). Climate Change 2007: The Physical Science Basis. Cambridge, United Kingdom and New York, NY, USA: Cambridge University Press. pp. 996.

Anonymous. (2007). Climate Change 2007: Climate Impacts, Adaptation and Vulnerability. Working Group II to the Intergovernmental Panel on Climate Change Fourth Assessment Report, DRAFT technical summary 2006. Intergovernmental Panel on Climate Change, Geneva

Chakravarty, S.; Ghosh, S. K.; Suresh, C. P.; Dey, A. N. and Shukla, G. (2012). Deforestation: Causes, effects and control strategies. In: Global Perspectives on Sustainable Forest Management, ed. Okia, C. A. Intech Publishers, Croatia.pp. 3–28

Grover, V. I. (eds.) (2004). Climate Change: Five years after Kyoto. Science Publishers Inc., Enfield, USA.

Singh BK,l Annette L. Cowie,K. Yin Chan,(2011). Soil Health and Climate Change, Soil Biology, Volume 29.

Houghton JT, Ding Y, Griggs DJ, Noguer M, van der Linden PJ and Xiaosu D (2001). Climate change : the scientific basis (Houghton JT, Ding Y, Griggs DJ, Noguer M, van der Linder PJ, Dai X, Maskell K and Johnson CA, eds), pp. 1–83. Cambridge University Press, Cambridge, UK.

Brundrett MC (2009). Mycorrhizal associations and other means of nutrition of vascular plants: understanding the global diversity of host plants by resolving conflicting information and developing reliable means of diagnosis. Plant Soil 320: 37–77.

Bent E (2006). Induced systemic resistance mediated by plant growth-promoting rhizobacteria (PGPR) and fungi (PGPF). Multigenic and Induced Systemic Resistance in Plants (Tuzun S and Bent E, eds), pp. 225–258. Springer, Berlin.

Schimel, J., Balser, T. C., and Wallenstein, M. (2007). Microbial stress‐response physiology and its implications for ecosystem function. Ecology, 88(6), 1386-1394.

Balser TC, Firestone MK (2005). Linking microbial community composition and soil processes in a California annual grassland and mixed-conifer forest. Biogeochemistry 73:395–415

Gutknecht JLM (2007). Exploring long-term microbial responses to simulated global change. Doctoral dissertation, University of Wisconsin, Madison, WI

Fitter AH, Heinemeyer A, Staddon PL (2000). The impact of elevated CO2 and global climate change on arbuscular mycorrhizas: a mycocentric approach. New Phytol 147:179–187

Zogg GP, Zak DR, Ringelberg DB, MacDonald NW, Pregitzer KS, White DC (1997). Compositional and functional shifts in microbial communities due to soil warming. Soil Sci Soc Am J 61:475–481

Classen AT, Sundqvist MK, Henning JA, Newman GS, Moore JAM, Cregger MA, Moorhead LC, Patterson CM (2015). Direct and indirect effects of climate change on soil microbial and soil microbial plant interactions: What lies ahead? Ecosphere 6(8):1–21

American Society for Microbiology (2008). Climate change could impact vital functions of microbes. Science Daily. Www.sciencedaily.com/releases/2008/06/080603085922.htm.

Zimmer C (2010). The microbe factor and its role in our climate future. http://e360.yale.edu/feature/the microbe factor and its role in our climate future/2279/.

Schindlbacher A, Rodler A, Kuffner M, Kitzler B, Sessitsch A, Zechmeister Boltenstern S (2011). Experimental warming effects on the microbial community of a temperate mountain forest soil. Soil Biol Biochem 43(7):1417–1425

Schurig C, Smittenberg RH, Berger J, Kraft F, Woche S, Goebel MO, Heipieper HJ, Miltner A, Kaestner M (2013). Microbial cellenvelope fragments and the formation of soil organic matter: a case study from a glacier forefield. Biogeochemistry 113:595–612

IPCC (2013). Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Inter governmental Panel on Climate Change. Cambridge University Press, Cambridge, UK.

Li, Y., Dong, S., Liu, S., Zhou, H., Gao, Q., Cao, G., ... and Larionova, X. (2015). Seasonal changes of CO2, CH4 and N2O fluxes in different types of alpine grassland in the Qinghai-Tibetan Plateau of China. Soil Biology and Biochemistry, 80, 306-314.

Oenema, O.; Wrage, N.; Velthof, G. L.; van Groenigen, J . W.; Dolfing, J. and Kuikman, P. J . (2005). Trends in global nitrous oxide emissions from animal production systems.Nutrient Cycling in Agroecosystems 72: 51–65.

Smith, P. (2004). Carbon sequestration in croplands: The potential inEurope and the global context. European Journal of Agronomy 20: 229–236.

Smith, P.; Martino, D.; Cai, Z.; Gwary, D.; Janzen, H.; Kumar, P.; McCarl, B. et al. (2007). Agriculture. In:Climate Change 2007: Mitigation. Contribution of Working Group III to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change, eds. Metz, B; Davidson, O. R.; Bosch, P. R.; Dave, R. and Meyer, L. A. Cambridge University Press,Cambridge, United Kingdom and New York, NY, USA.

Phillips RL, Whalen SC, Schlesinger WH (2001). Influence of atmospheric CO2 enrichment on methane consumption in a temperate forest soil. Global Change Biol 7:557–563

De Graaff MA, Van Groenigen KJ, Six J, Hungate B, van Kessel C (2006). Interactions between plant growth and soil nutrient cycling under elevated CO2: a meta-analysis. Global Change Biol 12:2077–2091

Shim JH, Pendall E, Morgan JA, Ojima DS (2009). Wetting and drying cycles drive variations in the stable carbon isotope ratio of respired carbon dioxide in semi-arid grassland. Oecology 160:321–333

Aanderud ZT, Schoolmaster DR Jr, Lennon JT (2011). Plants mediate the sensitivity of soil respiration to rainfall variability. Ecosystems 14:156–167.

Singh BK, Bardgett RD, Smith P, Reay DS (2010). Microorganisms and climate change: terrestrial feedbacks and mitigation options. Nat Rev Microbiol 8:779–790

Castro HF, Classen AT, Austin EE, Norby RJ, Schadt CW (2010). Soil microbial community responses to multiple experimental climate change drivers. Appl Environ Microbiol 76(40):999–1007

Aanderud ZT, Jones SE, Schoolmaster DR Jr, Fierer N, Lennon JT (2013). Sensitivity of soil respiration and microbial communities to altered snowfall. Soil Biol Biochem 57:217–227

Rey A, Pegoraro E, Tedeschi V, De Parri I, Jarvis PG, Valentini R (2002). Annual variation in soil respiration and its components in a coppice oak forest in Central Italy. Global Change Biol 8:851–866

Lavigne MB, Foster RJ, Goodine G (2004). Seasonal and annual changes in soil respiration in relation to soil temperature, water potential and trenching. Tree Physiol 24:415–424

Maurer, G. E., and Bowling, D. R. (2014). Seasonal snowpack characteristics influence soil temperature and water content at multiple scales in interior western US mountain ecosystems. Water Resources Research, 50(6), 5216-5234.

Schimel, J. P. (2018). Life in dry soils: effects of drought on soil microbial communities and processes. Annual review of ecology, evolution, and systematics, 49, 409-432.

Schjonning, P., I. K. Thomsen, P. Moldrup, and B. T. Christensen. (2003). Linking soil microbial activity to water- and air-phase contents and diffusivities. Soil Science Society of America Journal 67:156–165.

Fierer N, Schimel JPA (2003). Proposed mechanism for the pulse in carbon dioxide production commonly observed following the rapid rewetting of a dry soil. Soil Sci Soc Am J 67:798–805

Reichstein M, Subke JA, Angeli AC, Tenhunen JD (2005). Does the temperature sensitivity of decomposition of soil organic matter depend upon water content, soil horizon, or incubation time? Glob Change Biol 11:1754–1767

Carbone, M. S., C. J. Still, A. R. Ambrose, T. E. Dawson, A. P. Williams, C. M. Boot, S. M. Schaeffer, and J. P. Schimel. (2011). Seasonal and episodic moisture controls on plant and microbial contributions to soil respiration. Oecologia167:265–278.

Bauer, J., M. Herbst, J. A. Huisman, L. Weihermuller, and H. Vereecken. (2008). Sensitivity of simulated soil heterotrophic respiration to temperature and moisture reduction functions.Geoderma 145:17–27.

Burton, J., Chen, C., Xu, Z., and Ghadiri, H. (2010). Soil microbial biomass, activity and community composition in adjacent native and plantation forests of subtropical Australia. J. Soils Sediments 10, 1267–1277. doi:10.1007/s11368- 010-0238-y

Zhou, G., Zhang, J., Chen, L., Zhang, C., and Yu, Z. (2016). Temperature and straw quality regulate the microbial phospholipid fatty acid composition associated with straw decomposition. Pedosphere 26, 386–398. doi: 10.1016/ S1002-0160(15)60051-0

Lin, Y. T., Hu, H. W., Whitman, W. B., Coleman, D. C., and Chiu, C. Y. (2014). Comparison of soil bacterial communities in a natural hardwood forest and coniferous plantations in perhumid subtropical low mountains. Bot. Stud. 55:50. doi: 10.1186/s40529-014-0050-x

Shigyo, N., Umeki, K., and Hirao, T. (2019). Plant functional diversity and soil properties control elevational diversity gradients of soil bacteria. FEMS Microbiol. Ecol. 95:fiz025. doi: 10.1093/femsec/fiz025

Baldrian, P., Šnajdr, J., Merhautová, V., Dobiášová, P., Cajthaml, T., and Valášková, V. (2013). Responses of the extracellular enzyme activities in hardwood forest to soil temperature and seasonality and the potential effects of climate change. Soil Biol. Biochem. 56, 60–68. doi: 10.1016/j.soilbio.2012. 01.020

Smith SE and Read DJ. (2008). Mycorrhizal Symbiosis. Cambridge, UK: Academic Press.

Compant S, van der Heijden MGA, Sessitsch A. (2010). Climate change effects on beneficial plant–microorganism interactions. FEMS Microbiology Ecology 73: 197–214

Kivlin SN, Hawkes CV, Treseder KK. (2011). Global diversity and distribution of arbuscular mycorrhizal fungi. Soil Biology and Biochemistry 43: 2294–2303

Davies FT, Olalde-Portugal V, Aguilera-Gomez L, Alvarado MJ, Ferrera-Cerrato RC, Boutton TW. (2002). Alleviation of drought stress of chile ancho pepper Capsicum annuum L. cv. San Luis) with arbuscular mycorrhiza indigenous to Mexico. Scientia Horticulturae 92: 347– 359.

Staddon PL, Thompson K, Jakobsen I, Grime JP, Askew AP, Fitter AH. (2003). Mycorrhizal fungal abundance is affected by long-term climatic manipulations in the field. Global Change Biology 9: 186–194

Rillig MC, Wright SF, Shaw MR, Field CB. (2002). Artificial climate warming positively affects arbuscular mycorrhizae but decreases soil aggregate water stability in annual grassland. Oikos 97: 52–58.

Lavelle P, Bignell D, Lepage M, Wolters V, Roger P, Ineson P, Heal OW, Dhillion S (1997). Soil function in a changing world: the role of invertebrate ecosystem engineers. Eur J Soil Sci 33:159–193

Chan KY (2004). Impact of tillage practices and burrows of a native Australian anecic earthwormon soil hydrology. Appl Soil Ecol 27:89–96

Daniel, O. (1991). Leaf-litter consumption and assimilation by juveniles of Lumbricus terrestris L.(Oligochaeta, Lumbricidae) under different environmental conditions. Biology and Fertility of Soils, 12, 202-208.

Baker GH, Whiby WA (2003). Soil pH preferences and the influences of soil type and temperature on the survival and growth of Aporrectodea long (Lumbricidae). Pedobiologia 47:745–753

Warburg MR, Linsentnair KE, Bercoviz K (1984). The effect of climate on the distribution an abundance of isopods. Symp Zool Soc Lond 53:339–3567

Couteauz M, Bolger T (2000). Interactions between atmospheric CO2 enrichment and soil fauna. Plant Soil 224:123–134

Aamir, M., Rai, K. K., Dubey, M. K., Zehra, A., Tripathi, Y. N., Divyanshu, K. and Upadhyay, R. S. (2019). Impact of climate change on soil carbon exchange, ecosystem dynamics, and plant–microbe interactions. In Climate change and agricultural ecosystems (pp. 379-413). Woodhead Publishing.

Burns, R. G., DeForest, J. L., Marxsen, J., Sinsabaugh, R. L., Stromberger, M. E., Wallenstein, M. D., and Zoppini, A. (2013). Soil enzymes in a changing environment: current knowledge and future directions. Soil Biology and Biochemistry, 58, 216-234.

Steinweg, J.M.; Dukes, J.S.; Paul, E.A.; Wallenstein, M.D. (2013). Microbial responses to multifactor climate change: Effects on soil enzymes. Front. Microbiol. 4, 146. DOI: 10.3389/fmicb. 2013.00146.

Zhang Y, Chen W, Smith SL, Riseborough DW, Cihlar J (2005). Soil temperature in Canada during the twentieth century: Complex responses to atmospheric climate change. Journal of Geophysical Research 110: D03112.

Sardans, J., Peñuelas, J., and Estiarte, M. (2008). Changes in soil enzymes related to C and N cycle and in soil C and N content under prolonged warming and drought in a Mediterranean shrubland. Applied Soil Ecology, 39(2), 223-235.

Sardans, J., & Peñuelas, J. (2005). Drought decreases soil enzyme activity in a Mediterranean Quercus ilex L. forest. Soil Biology and Biochemistry, 37(3), 455-461.doi:10.1016/j. soil bio. 2004.08.004

Davidson, E. A., Belk, E., and Boone, R. D. (1998). Soil water content and temperature as independent or confounded factors controlling soil respiration in a temperate mixed hardwood forest. Global change biology, 4(2), 217-227.

Conant, R. T., Ryan, M. G., Ågren, G. I., Birge, H. E., Davidson, E. A., Eliasson, P. E., and Bradford, M. A. (2011). Temperature and soil organic matter decomposition rates–synthesis of current knowledge and a way forward. Global change biology, 17(11), 3392-3404.

Ekschmitt, K., Liu, M., Vetter, S., Fox, O., & Wolters, V. (2005). Strategies used by soil biota to overcome soil organic matter stability—why is dead organic matter left over in the soil?. Geoderma, 128(1-2), 167-176.

Allison,S.D.,and Treseder,K.K. (2008). Warming and drying suppress microbial activity and carbon cycling in boreal forest soils. Glob. Chang.Biol. 14, 2898–2909.doi: 10.1111/j.1365-2486.2008.01716.x

Allison,S.D.,Weintraub,M.N., Gartner,T.B.,and Waldrop,M.P. (2011). “Evolutionary-economic principles as regulatorsofsoil enzyme production and ecosystem functioning Soil Enzymology, eds G. ShuklaandA.Varma.(Berlin: Springer-Verlag),229–243.

Clevel and,C.C.,and Liptzin,D. (2007). C: N: P stoichiometry in soil :is there a “Red field ratio “for the microbial biomass? Biogeochemistry 85, 235–252.doi:10.1007/s10533- 007-9132-0

Sinsabaugh, R.L., Hill, B.H., and Shah, J.J.F.(2009). Eco enzymatic stoichiometry of microbial organic nutrient acquisition in soil and sediment. Nature 462, 795–798.doi: 10.1038/nature08632

Allison SD, Vitousek PM (2005). Responses of extracellular enzymes to simple and complex nutrient inputs. Soil Biol Biochem 37:937–944

Stone MM, Weiss MS, Goodale CL, Adams MB, Fernandez IJ, German DP et al (2012). Temperature sensitivity of soil enzyme kinetic sunder N-fertilization in two temperate forests. Global Change Biol 18:1173–1184

Allison,S.D.(2005). Cheaters, diffusion and nutrients constrain decomposition by microbial enzymes in spatially structured environments. Ecol. Lett. 8, 626–635. doi:10.1111/j.1461- 0248.2005.00756.x

Blankinship, J. C., P. A. Niklaus, and B. A. Hungate. (2011). A meta-analysis of responses of soil biota to global change. Oecologia 165:553–565.

Duan, B., Zhang, Y., Xu, G., Chen, J., Paquette, A., & Peng, S. (2015). Long-term responses of plant growth, soil microbial communities and soil enzyme activities to elevated CO2 and neighbouring plants. Agricultural and Forest Meteorology, 213, 91-101.

Fierer N, Jackson RB (2006). The diversity and biogeography of soil bacterial communities. Proc Natl Acad Sci 103:626–631

Wu Z, Dijkstra P, Koch GW, Pen˜uelas J, Hungate BA (2011). Responses of terrestrial ecosystems to temperature and precipitation change: a meta-analysis of experimental manipulation. Global Change Biol 17:927–942

Andersen, R., Chapman, S. J., and Artz, R. R. E. (2013). Microbial communities in natural and disturbed peatlands: a review. Soil Biology and Biochemistry, 57, 979-994.

De Vries, F. T., Griffiths, R. I., Bailey, M., Craig, H., Girlanda, M., Gweon, H. S., and Bardgett, R. D. (2018). Soil bacterial networks are less stable under drought than fungal networks. Nature communications, 9(1), 3033.

Anderson JPE and Domsch KH (2010). A physiological method for the quantitative measurement of microbial biomass in soil. Soil Biol Biochem 2010:215–221

Fierer N, Craine JM, McLauchlan K et al (2005). Litter quality and the temperature sensitivity of decomposition. Ecology 86:320–326

Wang G, Post WM, Mayes MA (2013). Development of microbial- enzyme-mediated decomposition model parameters through steady-state and dynamic analyses. Ecol Appl 23:255–272

Larionova A, Yevdokimov IV, Bykhovets SS (2007). Temperature response of soil respiration is dependent on concentration of readily decomposable C. Biogeosciences 4:1073–1081

Joergensen RG (2010). Organic matter and micro-organisms in tropical soils. In: Dion P (ed) Soil biology and agriculture in the tropics. Springer, Berlin, pp 17–43

Cardon ZG, Gage DJ (2006). Resource exchange in the rhizosphere: molecular tools and the microbial perspective. Ann Rev Ecol Evol Syst 37:459–488.

Lauenroth WK, Bradford JB (2006). Ecohydrology and the partition- ing AET between transpiration and evaporation in a semiarid steppe. Ecosystems 9:756–767.

Rey A and Jarvis P (2006). Modelling the effect of temperature on carbon mineralization rates across a network of European forest sites (FORCAST). Global Change Biol 12:1894–1908.




DOI: https://doi.org/10.46676/ij-fanres.v5i2.342

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